RICE GENETICS V

RICE GENETICS V
Proceedings of the Fifth International Rice Genetics Symposium

The Philippines, 19 - 23 November 2005

CONTENTS


FRONT MATTER	i
Rice—a model genome for cereal research
Rice as a reference genome and more R.L. Phillips, W.E. Odland and A.L. Kahler	3
The complete rice genome sequence: a gold mine for future rice research T. Sasaki, T. Matsumoto, J. Wu and N. Namiki	17
Annotation of the rice genome Shu Ouyang, Wei Zhu, J. Hamilton, Haining Lin, M. Campbell, Yuandan Lee, R.L. Malek, Aihui Wang, Qiaoping Yuan, B. Haas, J. Wortman and C.R. Buell	29
Structural genomics and resources
The Oryza map alignment project (OMAP): a new resource for comparative genomics studies within Oryza R.A. Wing, H.R. Kim, J.L. Goicoechea, Y. Yu, D. Kudrna, A. Zuccolo, S.S. Ammiraju Jetty, M. Luo, W. Nelson, C. Soderlund, P. San Miguel, N. Gill, J. Walling, S. Jackson, B. Hurwitz, D. Ware, L. Stein, D. Brar and D. Mackill	51
Analysis of oligo hybridization properties by high-resolution tiling microarrays in rice Xiangfeng Wang, Lei Li, Viktor Stolc, Waraporn Tongprasit, Chen Chen, Jun Wang, Songgang Li and Xing Wang Deng	65
Tissue culture–induced mutations and overexpression of full-length cDNAs as a tool for functional analysis of rice genes H. Hirochika, A. Miyao, M. Yamazaki, A. Takahashi, G.K. Agrawal, C. Cheng, Y. Yamashita, M. Harada, H. Nakamura, M. Hakata and H. Ichikawa	77
Analysis of genome sequences from the maternal and paternal parents of an elite rice hybrid Jun Yu, Gane K.-S. Wong, Siqi Liu, Jian Wang and Huanming Yang	85
Developmental biology and gene regulation
T-DNA tagging for developmental biology G. An, D.-H. Jeong, S. An and S. Park	103
Novel insights into the genomics of rice root adaptive development C. Périn, J. Rebouillat, A. M. C. Brasileiro, A. Diévart, P. Gantet, J. C. Breitler, A. A. T. Johnson, B. Courtois, N. Ahmadi, M. de Raissac, D. Luquet, M. Conte, D. This, P. K. Pati, Q. H. Le, D. Meynard, J. L. Verdeil and E. Guiderdoni	117
Molecular signaling in disease resistance of rice K. Shimamoto, A. Nakashima, M. Fujiwara, N. T. Phuong, L. Chen, H. L. Wong, D. Miki, K. Imai, S. Maisonneuve, H. Takahashi, Y. Kawaguchi, S. Hirai and T. Kawasaki	143
Applied genetics
QTLs in rice breeding: examples for abiotic stresses D. J. Mackill, B. C. Y. Collard, C. N. Neeraja, R. M. Rodriguez, S. Heuer and A. M. Ismail	155
Isolation of a QTL gene controlling grain number and QTL pyramiding to combine loci for grain number and plant height in rice M. Ashikari, S. Lin, T. Yamamoto, T. Takashi, A. Nishimura, E. R. Angeles, Q. Qian, H. Kitano and M. Matsuoka	169
Genetic and molecular dissection of flowering time in rice M. Yano and T. Izawa	177
Understanding broad-spectrum durable resistance in rice J. E. Leach, R. Davidson, B. Liu, P. Manosalva, R. Mauleon, G. Carrillo, M. Bruce, J. Stephens, M. G. Diaz, R. Nelson, C. Vera Cruz and H. Leung	191
Identification and transfer of trait-enhancing alleles from wild species S. R. McCouch, M. Sweeney, J. Li, H. Jiang, M. Thomson, E. Septiningsih, P. Moncada, J. Xiao, J. Coburn, E. Fraker, A. Garris, T. Tai, C. Martínez, J. Tohme, M. Sugiono, A. McClung, L. P. Yuan and S.-N. Ahn	209
Genomics-based strategies for the development of "green super rice" Qifa Zhang	235
From gene to adaptation in rice K. Onishi and Y. Sano	251
Lessons from applying genomics to wheat and barley improvement P. Langridge	267
The major chromosome pairing locus (Ph1) in hexaploid wheat: a perspective G. Moore	285
Functional genomics and rice improvement
Functional genomics for gene discovery in abiotic stress response and tolerance K. Shinozaki and K. Yamaguchi-Shinozaki	301
Expression and functional analysis of rice genes involved in reproductive development and stress response A.K. Tyagi, J.P. Khurana, P. Khurana, S. Kapoor, V.P. Singh, A.K. Singh, J.K. Thakur, V. Gupta, S. Anand, S. Vij, M. Jain, S. Ray, P. Agarwal, R. Arora, P. Sharma, S. Mukherjee, A. Nijhawan, J. Giri and R. Khurana	313
Designing and constructing novel gene promoters to generate stress-tolerant plants without yield penalty Tuan-hua David Ho, Chwan-Yang Hong, Ming-Tsair Chan and Sumay Yu	331
Rice: an emerging model for plant systems biology A. von Zychlinski, S. Baginsky and W. Gruissem	341
BACK MATTER	353
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