RICE GENETICS IV

RICE GENETICS IV
Proceedings of the Fourth International Rice Genetics Symposium

Los Baños, Laguna, Philippines, 22 - 27 October 2000

CONTENTS


FRONT MATTER	i
Overview
Rice genetics from Mendel to functional genomics G. S. Khush and D. S. Brar	3
Application of Mendelian genetics in rice breeding J. N. Rutger and D. J. Mackill	27
The Rockefeller Foundation's International Program on Rice Biotechnology J. C. O'Toole, G. H. Toenniessen, T. Murashige, R. R. Harris and R. W. Herdt	39
Molecular markers, genetic diversity, and evolution
Evolution and domestication of rice H. Morishima	63
Rice: a central genome for the genetics of all cereals M. Gale, G. Moore and K. Devos	79
Phylogeny of the genus Oryza as revealed by molecular approaches Song Ge, Tao Sang, Bao-Rong Lu and De-Yuan Hong	89
Miniature inverted repeat transposable elements help create genomic diversity in maize and rice S. R. Wessler, A. Nagel and A. Casa	107
Microsatellite markers in rice: abundance, diversity, and applications S. R. McCouch, S. Temnykh, A. Lukashova, J. Coburn, G. DeClerck, S. Cartinhour, S. Harrington, M. Thomson, E. Septiningsih, M. Semon, P. Moncada and Jiming Li	117
Molecular mapping and marker-assisted selection for major-gene traits in rice D. J. Mackill and Junjian Ni	137
QTL mapping in rice: a few critical considerations Zhi-Kang Li	153
Genetic and molecular basis of heterosis in rice Qifa Zhang, Jinping Hua, Sibin Yu, Lizhong Xiong and Caiguo Xu	173
Structural and functional genomics
The International Rice Genome Sequencing Project: progress and prospects T. Sasaki, T. Matsumoto, T. Baba, K. Yamamoto, J. Wu, Y. Katayose and K. Sakata	189
Strategies and techniques for finishing genomic sequence M. de la Bastide, D. Johnson, V. Balija and W. R. McCombie	197
Sequence-tagged connector/DNA fingerprint framework for rice genome sequencing R. A. Wing, Yeisoo Yu, G. Presting, D. Frisch, T. Wood, Sung-Sick Woo, M. Arief Budiman, Long Mao, Hye Ran Kim, T. Rambo, E. Fang, B. Blackmon, J. L. Goicoechea, S. Higingbottom, M. Sasinowski, J. Tomkins, R. A. Dean, C. Soderlund, W. R. McCombie, R. Martienssen, M. de la Bastide, R. Wilson and D. Johnson	215
Naturally occurring allelic variations as a new resource for functional genomics in rice M. Yano	227
Deletion mutants for functional genomics: progress in phenotyping, sequence assignment, and database development H. Leung, C. Wu, M. Baraoidan, A. Bordeos, M. Ramos, S. Madamba, P. Cabauatan, C. Vera Cruz, A. Portugal, G. Reyes, R. Bruskiewich, G. McLaren, R. Lafitte, G. Gregorio, J. Bennett, D. Brar, G. Khush, P. Schnable, G. Wang and J. Leach	239
Generation of T-DNA insertional tagging lines in rice Gynheung An, Jong-Seong Jeon, Sichul Lee, Ki-Hong Jung, Sung-Hoon Jun, Dong-Hoon Jeong, Jinwon Lee, Seonghoe Jang, Shin-Young Lee, Kiyoung Yang, Byoungho Lee, Sinok Moon, Kyungsook An, Min-Jung Han, Jung-Hwa Yu, Namok Lee, Su-Young An, Sun-Hee Park, Eun-Sik Song, In-Soon Park and Hyun-Sook Lee	253
Transposons and functional genomics in rice R. Greco, P. B. F. Ouwerkerk, C. Sallaud, A. Kohli, C. Favalli, T. Beguiristain, L. Colombo, E. Pè, P. Puigdomènech, E. Guiderdoni, P. Christou, J. H. C. Hoge and A. Pereira	263
Retrotransposons of rice as a tool for the functional analysis of genes H. Hirochika, A. Miyao, M. Yamazaki, S. Takeda, K. Abe, R. Hirochika, G. K. Agrawal, T. Watanabe, K. Sugimoto, T. Sasaki, K. Murata, K. Tanaka, K. Onosato, A. Miyazaki, Y. Yamashita and N. Kojima	279
Bioinformatics and the rice genome B. A. Antonio, K. Sakata and T. Sasaki	293
Gene isolation and function
Enhancing deployment of genes for blast resistance: opportunities from cloning a resistance gene/avirulence gene pair B. Valent, G. T. Bryan, Y. Jia, L. Farrall, S. A. McAdams, K. N. Faulk and M. Levy	309
Molecular signaling in disease resistance of rice K. Shimamoto, A. Takahashi and T. Kawasaki	323
Structure, function, and evolution of disease resistance genes in rice Guo-Liang Wang, Hei Leung and P. Ronald	335
Isolation of candidate genes for tolerance of abiotic stresses H. J. Bohnert, S. Kawasaki, C. B. Michalowski, Hong Wang, N. Ozturk, M. Deyholos and D. Galbraith	345
Molecular dissection of cell death in rice H. Uchimiya, M. Kawai, M. Yamaguchi and M. Umeda	365
Molecular tools for achieving synthetic apomixis in hybrid rice J. Bennett, X.-Z. Bi, A. Kathiresan and G. S. Khush	377
Transformation
Engineering for virus resistance in rice N. M. Upadhyaya, Z. Li, M.-B. Wang, S. Chen, Z.-X. Gong and P. M. Waterhouse	405
Transgenic approaches for generating rice tolerant of dehydration stress Z. Q. Cheng, J. Targolli, J. Su, C. K. He, F. Li and R. Wu	423
High-level expression of C₄ photosynthetic genes in transgenic rice M. Matsuoka, H. Fukayama, M. S. B. Ku and M. Miyao	439
Transgene integration, organization, and expression in cereals P. Christou, R. M. Twyman, Xiangdong Fu, E. Wegel, A. Kohli and E. Stoger	449
Gene silencing and its reactivation in transgenic rice T. C. Hall, S. P. Kumpatla, P. Kharb, L. Iyer, M. Cervera, Y. Jiang, T. Wang, G. Yang, P. Teerawanichpan, J. Narangajavana and J. Dong	465
Workshop reports
BACK MATTER	484
Back