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ADVANCES IN RICE GENETICS Los Baños, Laguna, Philippines, 22 - 27 October 2000 CONTENTS FRONT MATTER i Genetics and breeding of agronomic traits Comparing agronomic performance of breeding populations derived from anther culture and single-seed descent in rice H. P. Moon, K. H. Kang, I. S. Choi, O. Y. Jeong, H. C. Hong, S. H. Choi and H. C. Choi 3 Advances in breeding salt-tolerant rice varieties B. Mishra, R. K. Singh and D. Senadhira 5 Breeding for salt tolerance in rice R. Ansari, A. Shereen, S. M. Alam, T. J. Flowers and A. R. Yeo 8 Genetic analysis and prediction of heterosis C. H. M. Vijayakumar, M. Ilyas Ahmed, B. C. Viraktamath, M. S. Ramesha and A. Jauhar Ali 10 Relationship of parental genetic diversity with heterosis in two-line and three-line Philippine rice hybrids L. S. Moreno, S. A. Ordoñez, I. A. Dela Cruz and E. D. Redoña 12 Stable high-yielding ability of japonica-indica hybrid rice T. Takita, K. Terashima, N. Yokogami and T. Kataoka 15 Inheritance of fertility restoration of WA cytoplasm in sodic-tolerant rice hybrids A. Jauhar Ali, S. E. Naina Mohammed, R. Rajagopalan and C. H. M. Vijayakumar 17 Genetic analysis of temperature-sensitive genic male sterility in rice A. Jauhar Ali, S. E. Naina Mohammed, R. Rajagopalan and C. H. M. Vijayakumar 19 Complexity of inheritance of thermosensitive genic male sterility in rice R. B. Li and M. P. Pandey 20 Characterizing tropical japonicas with wide compatibility based on isozyme pattern in rice S. S. Malik, D. S. Brar and G. S. Khush 24 Effects of cytoplasm and cytoplasm-nucleus interaction in breeding japonica rice D. Tao, F. Hu, G. Yang, J. Yang, P. Xu, J. Li, C. Ye and L. Dai 27 Genetic analysis of hybrid breakdown in a japonica/indica cross of rice T. Kubo and A. Yoshimura 30 Induction and use of japonica rice mutant R917 with broad-spectrum resistance to blast Mingxian Zhang, Jianlong Xu, Rongting Luo, De Shi and Zhikang Li 33 Partial resistance to rice blast in the tropics H. Kato, H. Tsunematsu, L. A. Ebron, M. J. T. Yanoria, D. M. Mercado and G. S. Khush 35 Developing near-isogenic lines for blast resistance in two genotypes of indica rice, IR24 and IR49830-7-1-2-2 L. A. Ebron, Y. Fukuta, H. Kato, T. Imbe, M. J. T. Yanoria, H. Tsunematsu, D. L. Adorada and G. S. Khush 36 Developing near-isogenic lines for rice blast resistance H. Tsunematsu, M. J. T. Yanoria, L. A. Ebron, N. Hayashi, I. Ando, D. M. Mercado, H. Kato, Y. Fukuta and T. Imbe 39 Improving field resistance to blast and eating quality in Japanese rice varieties Y. Uehara 41 Inheritance of resistance to bacterial blight in rice D. Sharma 45 Genetic analysis of resistance to bacterial blight in rice K.-S. Lee and G. S. Khush 46 Breeding bacterial blight–resistant rice cultivars at the Philippine Rice Research Institute R. E. Tabien and L. S. Sebastian 49 Inheritance and allelic relationships of rice gall midge resistance genes in some new donors Arvind Kumar, M. N. Shrivastava, R. K. Sahu, B. C. Shukla and S. K. Shrivastava 51 Genetics of submergence tolerance in rainfed rice: line × tester analysis O. N. Singh, Sanjay Singh, R. K. Singh and S. Sarkarung 54 Diallel analysis for cold tolerance at the germination stage in rice R. P. dela Cruz, S. C. K. Milach, L. C. Federizzi and A. F. de Rosso 56 Inheritance of nitrogen efficiency under aluminum stress in upland rice lines Y. Jagau, A. Makmur, H. Aswidinnoor and S. H. Sutjahjo 58 Genetic mechanism of variegation of a chlorophyll mutant originated from the cross between distantly related rice varieties M. Maekawa and K. Noda 60 Major genes controlling spikelet number per panicle in rice R. Mishra and M. P. Janoria 63 Genetic relationship between red pericarp and fertility restoration in rice S. Leenakumari, R. Gopakumar and G. Uma 64 Genetic analysis of morphological and related taxonomic traits in rice Qian Qian, Ping He, Xianwu Zheng, Ying Chen and Lihuang Zhu 67 Performance of backcrossed doubled-haploid lines of rice under contrasting moisture regimes: root system and grain yield components M. Toorchi, H. E. Shashidhar and S. Hittalmani 69 Developmental genetics of internodal elongation in floating rice T. Jishi and Y. Sano 72 Genetic divergence in photoperiod-insensitive autumn rice germplasm of northeast India R. P. Borkakati, P. Borah and P. C. Deka 74 The relationship between number of nitrogen-fixing rhizobacteria and growth pattern of rice varieties K. Hirano, T. Sugiyama, A. Kosugi, I. Nioh, T. Asai and H. Nakai 77 Genotype by environment interaction across normal and delayed planting in rainfed lowland rice environments of eastern India S. Singh, S. Sarkarung, O. N. Singh, R. K. Singh, V. P. Singh and C. B. Pandey 79 Using rice cultivar LGC-1 as a dietary food for patients with kidney disease M. Nishimura, N. Horisue, T. Imbe, M. Sakai and M. Kusaba 83 Characterization of a rice mutant showing an abnormal morphology T. Kawai and H. Kitano 85 Genetic diversity, evolution, and alien introgression RAPD variation in carbonized rice aged 13,010 and 17,310 years H. S. Suh, J. H. Cho, Y. J. Lee and M. H. Heu 89 Diphyletic origin of cultivated rice based on genetic analysis and archaeology Y. I. Sato, S. Yamanaka and Y. Fukuta 91 Evolutionary and molecular genetic studies at the waxy locus in cultivated rice and wild relatives S. Yamanaka, I. Nakamura, H. Nakai and Y. I. Sato 94 PCR-RFLP analysis of cpDNA and mtDNA in Oryza L. J. Chen, D. S. Lee and H. S. Suh 96 Evolutionary significance of varietal groups resistant to bacterial leaf blight in rice T. Ogawa, N. Endo, G. A. Busto, Jr., R. E. Tabien, S. Taura and G. S. Khush 99 Advances in rice chromosome research, 1995-2000 K. Fukui 103 Achievements in rice cytogenetics Hsin-Kan Wu and Ming-Hong Gu 106 Advanced cytogenetics in Oryzeae S. A. Jackson, Z. Cheng, J. Jiang and R. L. Phillips 109 Cell-cycle synchronization and flow karyotyping in rice J. H. Lee, Y. S. Chung, D. H. Kim, K. Y. Kim, J. W. Kim, O. C. Kwon and J. S. Shin 111 High-resolution fluorescence in situ hybridization (FISH) for gene mapping and molecular analysis of rice chromosomes N. Ohmido and K. Fukui 115 Analysis of meiosis in rice after mutagenic treatment N. A. Khailenko, A. I. Sedlovskiy and L. N. Tyupina 117 Genomic relationships of the AA genome Oryza species B. R. Lu, M. E. B. Naredo, A. B. Juliano and M. T. Jackson 118 Characterizing hybrid and backcross derivatives of O. sativa × O. minuta using species probes S. C. Tong, M. M. Clyde, Z. Zamrod, K. Narimah and A. L. Mariam 122 Genetic variation for perenniality in O. sativa/O. rufipogon derivatives E. J. Sacks, K. M. McNally, L. Liu, R. Lafitte and T. Sta. Cruz 123 Genetic population structures of Oryza glumaepatula and O. grandiglumis distributed in the Amazon flood area M. Akimoto and H. Morishima 126 Oryza glumaepatula Steud. introgression lines in rice: identification of genes for reproductive barriers Sobrizal, Y. Matsuzaki, K. Ikeda, P. L. Sanchez, K. Doi, H. Yasui, E. R. Angeles, G. S. Khush and A. Yoshimura 128 Advanced backcross analysis for transferring QTLs from O. rufipogon S. N. Ahn, K. H. Kang, J. P. Suh, S. J. Kwon, H. P. Moon, H. C. Choi and S. R. McCouch 130 Wild-QTL-allele effect in the background of japonica Nipponbare and indica (IR36) cultivars T. Ishii, N. S. Bautista, K. Shimadzutsu, N. Kobayashi, N. Uchida and O. Kamijima 133 Trait-improving wild QTL alleles identified using advanced backcross QTL analysis from a cross between cultivated rice, Oryza sativa, and wild rice, O. rufipogon N. S. Bautista, K. Shimadzutsu, T. Teranishi, S. Takamatsu, N. Kobayashi, N. Uchida, O. Kamijima and T. Ishii 135 Using new alleles from wild rice Oryza rufipogon to improve cultivated rice (O. sativa) in Latin America C. P. Martínez, P. Moncada, J. López, A. Almeida, G. Gallego, J. Borrero, M. C. Duque, W. Roca, S. R. McCouch, C. Bruzzone and J. Tohme 138 A new gene for resistance to bacterial blight from Oryza rufipogon Qi Zhang, S. C. Ling, B. Y. Zhao, C. L. Wang, W. C. Yang, K. J. Zhao, L. H. Zhu, D. Y. Li and C. B. Chen 143 Identifying blast resistance in Oryza species and its introgression into U.S. rice cultivars G. C. Eizenga, T. H. Tai, F. N. Lee and J. N. Rutger 145 Evaluation of O. sativa × O. glaberrima–derived lines using microsatellite markers M.-N. Ndjiondjop, J. Coburn, M. P. Jones and S. McCouch 147 Genetic analysis of pollen sterility loci found in hybrid progeny between Oryza sativa and O. glabberima K. Doi, K. Taguchi and A. Yoshimura 149 A rhizomatous individual obtained from interspecific BC1F1 progenies between Oryza sativa and O. longistaminata D. Tao, F. Hu, Y. Yang, P. Xu, J. Li, E. Sacks, K. L. McNally and P. Sripichitt 151 Identifying late heading genes in rice using Oryza glumaepatula introgression lines P. L. Sanchez, Sobrizal, K. Ikeda, H. Yasui and A. Yoshimura 153 Genetic variability of tolerance for iron toxicity in different species of Oryza and their derivatives R. D. Mendoza, J. A. Moliñawe, G. B. Gregorio, C. Q. Guerta and D. S. Brar 154 Identifying subspecies-specific DNA markers in rice J. H. Chin and H. J. Koh 157 Identifying RAPD markers to classify rice germplasm as indica or japonica R. P. da Cruz, M. C. B. Lopes, S. C. K. Milach and S. I. G. Lopes 160 DNA fingerprinting and phylogenetic analysis of Indian aromatic high-quality rice germplasm using panels of fluorescent-labeled microsatellite markers S. Jain, S. E. Mitchell, R. K. Jain, S. Kresovich and S. R. McCouch 162 Fingerprinting of Indian scented rice by RAPD markers T. Stobdan, V. K. Khanna, U. S. Singh and R. K. Singh 166 Relationship between heterosis in F1 hybrids and genetic similarity among parents as measured by RAPD, SSR, and co-ancestry analysis in japonica rice H. J. Koh, C. W. Park and J. H. Lee 170 Reproductive barriers between japonica and indica crosses Y. Harushima, M. Nakagahra, M. Yano, T. Sasaki and N. Kurata 173 Genetic basis of F1 hybrid sterility and gamete formation in rice R. Suzuki, N. Sawamura, T. Okazawa, Khin-Thidar and Y. Sano 176 Developmental cytology on gametic abortion caused by induced complementary genes gal and d60 in japonica rice M. Tomita, H. Yamagata and T. Tanisaka 178 Molecular diversity and its geographical distribution in core rice germplasm W. J. Xu, S. B. Yu, S. Singh, J. Domingo, H. Bhandari, Y. F. Lu, C. H. M. Vijayakumar, P. Bagali, S. Sarkarung, S. S. Virmani, G. S. Khush and Z. K. Li 182 Phenotypic diversity in embryo mutants induced by tissue culture in rice T. Iwamoto, S. K. Hong, H. Imai, M. Matsuoka and H. Kitano 184 Genetic diversity in Korean japonica rice cultivars S. J. Kwon, S. N. Ahn, C. I. Yang, H. C. Hong, Y. K. Kim, J. P. Suh, H. G. Hwang, H. P. Moon and H. C. Choi 186 Genetic diversity based on isozyme pattern of rice germplasm in China S. X. Tang, Y. Z. Jiang, X. H. Wei, D. S. Brar and G. S. Khush 188 Differential patterns of isozyme loci of Adh and Ldh between upland and lowland rice varieties L. J. Chen, D. S. Lee and H. S. Suh 192 Genetic diversity in seed storage proteins of Bangladeshi rice cultivars M. S. Jahan, T. Kumamaru, H. Satoh and A. Hamid 194 Genetic variation in storage protein and storage endosperm starch in local rice cultivars of Myanmar P. P. Aung, T. Kumamaru and H. Satoh 196 Variation in seed storage proteins of Pakistani rice germplasm S. U. Siddiqui, H. Satoh and T. Kumamaru 198 Genetic diversity in rainfed lowland rice genotypes as detected by RAPD primers S. Singh, S. Sarkarung, R. K. Singh, O. N. Singh, A. K. Singh, V. P. Singh, H. S. Bhandari, W. Xu and Z. Li 200 Marker-based estimation of coefficient of coancestry in rice D. A. Tabanao, L. S. Sebastian, A. L. Carpena, J. E. Hernandez, A. I. N. Gironella and R. N. Bernardo 203 Molecular cytological studies on a poly-egg rice mutant AP IV strain Y. Lu and X. Liu 207 Molecular markers, QTL mapping, and marker-assisted selection The application of molecular markers in rice M. Christopher, S. Garland, R. Reinke and R. Henry 213 Application of molecular markers in rice breeding in the Mekong Delta of Vietnam Bui Chi Buu and Nguyen Thi Lang 216 Converting rice RFLP markers to PCR-based markers by the dCAPS method T. Komori, T. Yamamoto and N. Nitta 221 DNA markers to assess genetic purity of rice hybrids R. V. Sonti, J. Yashitola, T. Thirumurugan, R. M. Sundaram, M. S. Ramesha and N. P. Sarma 223 RAPD markers from mitochondrial DNA can distinguish male sterile and fertile cytoplasm in indica rice D. L. Hong, M. Ichii, Y. Ohara, C. M. Zhao and S. Taketa 226 Fine mapping of the F1 pollen sterility loci S-a and S-c in rice using PCR-based markers Guiquan Zhang and Zemin Zhang 228 Map-based cloning of the Hd1 gene controlling photoperiod sensitivity in rice M. Ashikari, Y. Katayose, U. Yamanouchi, L. Monna, T. Fuse, T. Sasaki and M. Yano 230 Response of QTLs for heading date in rice at different sites from tropical to temperate regions Y. Fukuta, S. Kobayashi, H. Tsunematsu, L. A. Ebron, H. Kato, T. Umemoto, S. Morita, T. Sato, T. Yamaya, T. Nagamine, T. Fukuyama, H. Sasahara, I. Ashikawa, K. Tamura, H. Nemoto, H. Maeda, K. Hamamura, T. Ogata, Y. Matsue, K. Ichitani and A. Takagi 233 Mapping quantitative trait loci controlling heading date in rice K. Fujino, T. Sato, H. Kiuchi, H. Kikuchi, Y. Nonoue, Y. Takeuchi, S. Y. Lin and M. Yano 238 QTL analysis for heading date using recombinant inbred lines in rice M. Oda, H. Yasui and A. Yoshimura 240 Molecular mapping of Hwc-2, one of the complementary hybrid weakness genes in rice K. Ichitani, Y. Fukuta, K. Koba, S. Taura and M. Sato 243 Molecular markers for detecting bacterial blight resistance genes in maintainer lines of rice hybrids L. Borines, E. Redoña, B. Porter, F. White, C. Vera Cruz and H. Leung 245 Identifying major genes and QTLs for field resistance to neck blast in rice S. Hittalmani, Srinivasachary, P. Bagali and H. E. Shashidhar 248 Mapping QTLs for partial resistance to blast in rice M. Z. I. Talukder, C. Leifert and A. H. Price 250 Marker-assisted selection for transferring resistance to blast in high-yielding but susceptible Jyothi L. Babujee, B. Venkatesan, S. Kavitha, S. S. Gnanamanickam, S. Leenakumari, S. McCouch and S. Leong 253 Using microsatellite markers to select blast resistance in U.S. rice breeding lines R. G. Fjellstrom, C. Conaway, W. D. Park, M. A. Marchetti and A. M. McClung 255 Mapping a recessive gene conferring resistance to rice yellow mottle virus M. N. Ndjiondjop-Nzenkam, L. Albar, D. Fargette, C. Brugidou, M. P. Jones and A. Ghesquiere 257 Partial resistance to rice yellow mottle virus: QTL identification, genetic model, and QTL efficiency analysis after marker-assisted introgression N. Ahmadi, L. Albar, G. Pressoir, M. Lorieux, D. Fargette and A. Ghesquière 259 Constructing linkage maps of brown planthopper resistance genes Bph1, bph2, and Bph9 on rice chromosome 12 H. Murai, P. N. Sharma, K. Murata, Z. Hashimoto, Y. Ketipearachi, T. Shimizu, S. Takumi, N. Mori, S. Kawasaki and C. Nakamura 263 Molecular mapping and marker-aided selection of a gene conferring resistance to an Indian biotype of brown planthopper in rice K. K. Jena, I. C. Pasalu, Y. Varalaxmi, Y. Kondala Rao, K. Krishnaiah, G. Kochert and G. S. Khush 265 Mapping QTLs for brown planthopper (BPH) resistance introgressed from Oryza officinalis in rice H. Hirabayashi, R. Kaji, M. Okamoto, T. Ogawa, D. S. Brar, E. R. Angeles and G. S. Khush 268 RFLP mapping of antibiosis to rice green leafhopper M. Kadowaki, A. Yoshimura and H. Yasui 270 Mapping of a gene ovicidal to whitebacked planthopper Sogatella furcifera Horváth in rice M. Yamasaki, A. Yoshimura and H. Yasui 272 Molecular marker association for yellow stem borer resistance in rice A. Selvi, P. S. Shanmugasundaram, J. A. J. Raja and S. Mohankumar 274 Chromosome blocks are involved in adaptive gene complexes in rice landraces B. V. Ford-Lloyd, P. S. Virk, M. T. Jackson and H. J. Newbury 276 Drought tolerance in rice: QTLs, marker-assisted selection, and environmental interactions A. Price 279 Identifying traits and molecular markers associated with components of drought tolerance in rice H. E. Shashidhar, N. Sharma, M. Ashoka, V. Rao, M. Toorchi and S. Hittalmani 282 Genes/QTLs affecting flood tolerance in rice K. Sripongpankul, G. B. L. Posa, D. Senadhira, N. Huang, D. S. Brar, G. S. Khush and Z. Li 284 Mapping genes that control traits related to submergence tolerance in rice M. Seanglew, A. Vanavichit, S. Tragoonrung and S. Sarkarung 287 Identifying QTLs for cold tolerance–related traits in a Korean weedy rice J. P. Suh, S. N. Ahn, H. S. Suh, H. P. Moon and H. C. Choi 291 Mapping QTLs for salt tolerance in rice Nguyen Thi Lang, S. Masood, S. Yanagihara and Bui Chi Buu 294 Quantitative trait loci analysis of aluminum tolerance in rice V. T. Nguyen, H. T. Nguyen, B. T. Le, T. D. Le and A. H. Paterson 298 Mapping QTLs for ozone resistance in rice J. K. Sohn, J. J. Lee, K. M. Kim, Y. S. Kwon and M. Y. Eun 302 Fine mapping of genes controlling intermediate amylose content in rice using bulked segregant analysis J. Lanceras, S. Tragoonrung, A. Vanavichit and O. Naivikul 304 Association between amylose content and a microsatellite marker across exotic rice germplasm C. J. Bergman, R. G. Fjellstrom and A. M. McClung 307 Molecular genetic analysis of quantitative trait loci related to rice grain quality J. H. Lee, Y. S. Cho, K. H. Jung, M. T. Song, S. J. Yang, H. Y. Kim and H. C. Choi 309 Leaf senescence of a newly induced stay-green mutant and mapping of the gene in rice K. W. Cha, Y. J. Won and H. J. Koh 312 Mapping the rt (root growth-inhibiting) gene of rice by RFLP markers M. Miwa, Y. Inukai, K. Satoh, M. Itoh, Y. Katayama, M. Ashikari, M. Matsuoka and H. Kitano 314 Tagging and mapping of a new elongated-uppermostinternode gene—eui2(t)—using AFLP, RFLP, and SSR techniques S. L. Yang, R. C. Yang, X. P. Qu, H. L. Ma, Q. Q. Zhang, S. B. Zhang and R. H. Huang 317 Map-based cloning of Ps1, a gene for pollen abortion in rice S. Y. Lin, T. Takashi, T. Sasaki and M. Yano 319 Sequence-tagged site marker diagnostics for the CMS fertility-restoring gene Rf-3 in rice Nguyen Thi Lang, S. S. Virmani, N. Huang, D. S. Brar, Z. Li and B. C. Buu 321 Genetics and mapping of the nuclear fertility restorer gene for Honglian-type cytoplasmic male sterility in rice Yinguo Zhu, Qingyang Huang, Yuqing He and Runchun Jing 324 Molecular mapping and identification of QTLs for some agronomic traits in rice S. J. Kwon, S. N. Ahn, J. P. Suh, Y. C. Cho, H. C. Hong, Y. G. Kim, H. G. Hwang, H. P. Moon and H. C. Choi 326 Mapping QTLs associated with tolerance for enhanced ultraviolet-B radiation in rice T. Sato, Y. Fukuta, M. Yano and T. Kumagai 328 Genetic systems of cross-incompatibility as pre- and postfertilization barriers in rice K. Matsubara, R. Suzuki, Khin-Tidar, K. Okuno and Y. Sano 330 Relationship between genetic distance and heterosis under different fertilizer applications in rice Z. Z. Piao, Y. I. Cho and H. J. Koh 332 Isolating and characterizing molecular markers associated with seedling-stage cold tolerance in rice K. M. Kim, I. K. Chung, T. S. Kwak and J. K. Sohn 336 QTL analysis for discoloration of flag leaves during the ripening period in rice M. Obara, Y. Fukuta, M. Yano, T. Yamaya and T. Sato 338 QTL analysis of root vitality in a doubled-haploid population derived from anther culture of indica/japonica rice Teng Sheng, Zeng Dali, Zheng Xianwu, K. Yasufumi, Qian Qian and Zhu Lihuang 340 Genomics Rice functional genomics via cDNA microarray analysis J. Yazaki, N. Kishimoto, F. Fujii, K. Nakamura, J. Wu, K. Yamamoto, K. Sakata, T. Sasaki and S. Kikuchi 345 Developing genomics approaches for crop trait improvement H. Sakai, G. Taramino, N. Nagasawa, Guo-Hua Miao, J. Vogel and S. Tingey 350 A gene machine for rice N. M. Upadhyaya, X. -R. Zhou, Q. -H. Zhu, A. Eamens, K. Ramm, L. Wu, R. Sivakumar, S. Kumar, K. K. Narayanan, G. Thomas, T. Kato, D. -W. Yun, W. J. Peacock and E. S. Dennis 352 Comparative genomics in the Oryzeae S. A. Jackson, J. W. Lilly, R. L. Phillips, W. C. Kennard and R. A. Porter 355 T-DNA as a potential insertional mutagen in rice C. Sallaud, D. Meynard, J. P. Brizard, M. Bès, C. Gay, M. Raynal, E. Bourgeois, H. Hoge, M. Delseny and E. Guiderdoni 358 New Ac/Ds-based constructs for efficient gene and enhancer trapping in rice X. -R. Zhou, K. Ramm, L. Wu, R. Sivakumar, E. S. Dennis and N. M. Upahdyaya 362 Ac/Ds-mediated gene trap systems for functional genomics in rice B. I. Je, C. M. Kim, Su Hyun Park, Sung Han Park, Y. J. Na, J. J. Lee, B. G. Oh, N. M. Hee, G. H. Yi, H. Y. Kim and C. D. Han 365 A rice retrotransposon, Tos17, as a tool for gene tagging K. Murata, A. Miyao, K. Tanaka, M. Yamazaki, S. Takeda, K. Abe, K. Onosato, A. Miyazaki, Y. Yamashita, T. Sasaki and H. Hirochika 367 Structural polymorphism found in RMU1 (rice mutator class 1) transposable elements in rice K. Miura, R. Ishikawa, Y. Miyashita, M. Senda, S. Akada, T. Harada and M. Niizeki 369 Isolating and characterizing cold-responsive gene-trapped lines from rice S. C. Lee, S. H. Kim, S. J. Kim, H. S. Choi, M. Y. Lee, J. Y. Kim, K. Lee, S. H. Jeon, J. S. Jeon, G. An and S. R. Kim 370 Constructing a physical map of the rice genome A. C. Sanchez, B. Fu, R. Maghirang, C. Aquino, J. Mendoza, J. Talag, S. Yu, J. R. Domingo, K. L. McNally, P. Bagali, G. S. Khush and Z. K. Li 372 Centromere structure of rice chromosome 5 K. I. Nonomura and N. Kurata 375 Genic interaction between mutant genes related to morphogenesis of panicle and spikelet in rice I. Takamure, T. Aida and S. Niikura 377 Oryzabase: an integrated rice science database Y. Yamazaki, A. Yoshimura, Y. Nagato and N. Kurata 380 RiceGenes 5.0: an online genomic resource for the rice community A. M. Baldo, G. A. DeClerck, T. G. Cargioli, I. V. Yap, C. M. Larota, S. Cartinhour and S. R. McCouch 384 CD-ROM for PC version of RiceGenes, a rice-specific ACEDB Y. C. Shin, T. H. Lee, M. Y. Eun and B. H. Nahm 386 Performing line × tester analysis with the SAS® system V. I. Bartolome and G. B. Gregorio 389 Gene isolation and function One super-mutator transposon family found in rice R. Ishikawa, K. Miura, M. Ashida, M. Senda, S. Akada, T. Harada and M. Niizeki 395 A maize MuDR-like tranposable element transcribed in the rice genome S. Yoshida, N. Asakura, R. Ootani and C. Nakamura 397 Transcriptional analysis of the Mu-like element Tnr2 in rice F. Myouga, S. Tsuchimoto, H. Ohtsubo and E. Ohtsubo 400 Chloroplast targeting signal regulates transgene expression in rice I. C. Jang, K. H. Lee, B. H. Nahm and J. K. Kim 403 Isolation and functional characterization of the DREB family of genes in rice J. G. Dubouzet, Y. Sakuma, E. G. Dubouzet, S. Miura, K. Yamaguchi-Shinozaki and K. Shinozaki 406 Characterization and expression of rice monosaccharide transporter genes, OsMST1–3 K. Toyofuku, T. Takeda, J. Yamaguchi and M. Kasahara 409 Functional analysis of R2R3-Myb genes in rice J. W. Lee, S. K. Sung, S. K. Yi and G. An 411 Functional analysis of MADS-box genes expressed preferentially in vegetative tissues S. Y. Lee, S. H. Jang, S. H. Jun and G. H. An 414 Functional analysis of protein phosphatase 2C in rice K. Yang, D. H. Jeong and G. An 416 Functions of mitochondrial aldehyde dehydrogenase in rice under anaerobic conditions M. Nakazono, Y. Li, H. Tsuji, N. Tsutsumi and A. Hirai 418 Identification of differentially expressed genes during disease resistance response from rice by cDNA arrays Bin Zhou, Kaiman Peng, Zhaohui Chu, Shiping Wang and Qifa Zhang 421 Rice transcript RIM2 accumulates in response to Magnaporthe grisea and its predicted protein shares similarity with proteins encoded by CACTA transposons J. X. Dong, H. T. Dong, Z. H. He and D. B. Li 423 Chimeric receptor kinases for plant disease resistance engineering in rice Zuhua He, Zhiyong Wang, Qun Zhu, Jianming Li, C. Lamb, J. Chory and P. Ronald 425 Jasmonic acid- and salicylic acid-mediated defense signal transduction in rice Y. Yang, M. Qi, M. -W. Lee and L. Xiong 429 Alternative splicing bestows capacity for nuclear expression and mitochondrial targeting in rice K. Kadowaki and N. Kubo 431 Transferring the ribosomal protein S10 gene from the mitochondrion to the nucleus in rice N. Kubo, X. Jordana, K. Harada and K. Kadowaki 434 Hypothetical model of genetic regulation of the glutelin biosynthesis pathway Y. Takemoto, M. Ogawa, T. Kumamaru, T. W. Okita and H. Satoh 436 The alk locus controls amylopectin structure and starch synthase activity in rice T. Umemoto, M. Yano, H. Satoh, A. Shomura, K. Okamoto, K. Kobayashi and Y. Nakamura 439 Biosynthesis of rice S-poor and S-rich prolamins is regulated by an independent genetic system H. Matsusaka, T. Kumamaru, M. Ogawa and H. Satoh 441 Differential expression of rice genes in response to iron L. Hillebrand, P. S. Carmona and M. G. Moraes 444 Isolating and characterizing a cDNA encoding the iron-storage protein in rice Kwon Kyoo Kang and Yong Gu Cho 446 Identifying a novel superoxide dismutase isoform: a biological marker for evaluating drought-tolerant varieties of rice K. N. Singh and S. Sadasivam 449 Inducing dehydration tolerance in rice by regulated expression of genes for transcription factors S. J. Oh, E. H. Kim, S. Y. Kim, S. I. Song, S. Daughhetee, J. K. Kim and B. H. Nahm 451 Molecular cloning of the salt-responsive gene in rice M. Arumugam Pillai and S. Yanagihara 454 Developmental changes of phyllochron in the life cycle of rice Y. Itoh, S. Sato and Y. Sano 457 Effect of starch-branching enzyme IIb on amylopectin structure and gelatinization property A. Nishi, Y. Nakamura and H. Satoh 459 Analyses of sugar transport via the vascular system in rice C. Matsukura, T. Saitoh, T. Hirose, R. Ohsugi and J. Yamaguchi 462 Alteration of rice floral organ identity by ectopic expression of the rice MADS-box gene S. Lee, J. S. Jeon, Y. H. Moon, Y. Y. Chung and G. An 465 Expression analyses of the OsPNH1 gene in rice leaf development A. Nishimura, M. Ito, H. Kitano and M. Matsuoka 468 Gene expression pattern of cell division/elongation factors in rice dwarf mutants H. Tobina, S. Uozu, M. Matsuoka, H. Kitano and K. Hattori 470 Expressed sequence tag analysis of developing seed coat and characterization of the Ran gene in rice M. J. Han, S. H. Jun, S. R. Kim and G. An 473 Complex organization of the rice Purple leaf locus involved in tissue-specific accumulation of anthocyanin W. Sakamoto, M. Murata and M. Maekawa 475 Slender rice mutant is caused by null mutation of the SLR gene, an ortholog of the height-regulating gene GAI/RGA/RHT/D8 A. Ikeda, M. Ueguchi-Tanaka, Y. Sonoda, H. Kitano, Y. Futsuhara, M. Matsuoka and J. Yamaguchi 478 Characterizing a slender mutant with constitutive gibberellin-response in rice A. Ikeda, H. Kitano, Y. Sonoda, Y. Futsuhara and J. Yamaguchi 480 Molecular basis of 5-methyltryptophan-resistant rice Y. Ishikawa, H. Kisaka, M. Kisaka, H. -Y. Lee, A. Kanno and T. Kameya 482 Positional cloning of candidates for Xa4 in rice Wenxue Zhai, Wenming Wang, Xianwu Zheng and Lihuang Zhu 485 Antifreeze proteins: a molecular approach for developing cold-tolerant rice H. K. Khanna and G. Daggard 488 Arresting sexual embryo development in rice using DMC1 and REE5 genes A. Kathiresan, G. S. Khush and J. Bennett 490 Assessing the genetic propensity of rice for nodulation P. M. Reddy, J. K. Ladha, R. J. Hernandez-Oane and V. S. Sreevidya 492 Tissue culture and transformation Production of allohexaploid somatic hybrid plants by electrofusing mesophyll protoplasts of Porteresia coarctata (Roxb.) Tateoka and cell suspension-derived protoplasts of Oryza sativa L. N. B. Jelodar, N. W. Blackhall, T. P. V. Hartman, D. S. Brar, G. Khush, M. R. Davey, E. C. Cocking and J. B. Power 497 Enhancing salinity tolerance in rice using sexual and somatic hybrids of Oryza sativa and Porteresia coarctata E. C. Cocking, N. W. Blackhall, M. R. Davey, J. B. Power, D. S. Brar and G. S. Khush 500 Protoplast fusion for developing novel sources of rice cytoplasmic male sterility N. W. Blackhall, J. P. Jotham, M. R. Davey, J. B. Power and E. C. Cocking 501 Improved methods for anther and pollen culture in rice R. Gill, N. Kaur, A. S. Sindhu, T. S. Bharaj and S. S. Gosal 503 Androgenesis in aromatic rice hybrids M. Sakila, S. M. Ibrahim, A. Kalamani, S. Lakshmi Narayanan, N. Nadarajan and P. Rangasamy 506 Effect of maltose on anther culture of Tongil and indica rice G. H. Yi, M. H. Nam, B. G. Oh and H. Y. Kim 508 Selection of high green-plant regenerating lines through rice anther culture T. He, K. Luo, S. H. Han and X. X. Guo 509 Developing restorer lines in rice through anther culture J. S. Ryu, H. Ri, T. -S. Ri and S. -C. Hwang 512 Developing blast-resistant lines in rice through tissue culture methods J. -S. Ryu, J. -M. Choi, Y. -H. Kang and S. -Y. Kim 513 Induction and use of somatic embryogenesis in rice improvement N. M. Ramaswamy and M. K. Rajesh 514 Histological analysis of cell proliferation in early stages of rice seed culture J. Motoda and K. Hattori 517 Factors influencing callus induction and plant regeneration from young panicles of rice S. G. Fan, C. Y. Liang and H. X. Liu 518 Tissue culture studies on japonica × indica crosses in rice P. C. Deka, D. Sarma and B. K. Konwar 520 Identifying molecular markers associated with tissue culture performance in diverse rice germplasm M. D. Raven, H. J. Newbury and B. V. Ford-Lloyd 522 In vitro selection and rapid screening of high-lysine mutants in rice G. H. Yi, M. H. Nam, B. G. Oh and H. Y. Kim 526 Producing stable androclonal variants with improved agronomic traits in indica rice N. V. Desamero, C. L. Diaz, Y. A. Dimaano, M. V. Chico, S. S. Macabale, L. G. Domingo, E. R. Corpuz, T. F. Padolina, R. E. Tabien, J. M. Niones, G. B. Amar, H. R. Rapusas, M. V. Romero and P. S. Bonilla 527 Somaclonal restorable variation in cytoplasmic male sterile lines with cytoplasm from two wild species of Oryza D. H. Ling and Z. Ma 531 Studies on the cryopreservation of cell suspension cultures of Iranian indica and japonica rice cultivars N. B. Jelodar, M. R. Davey and E. C. Cocking 533 Clean DNA transformation: co-integration and expression analysis of five minimal transgene cassettes in rice P. K. Agrawal, P. Christou and A. Kohli 536 Effects of matrix attachment regions (MARs) on transgene expression levels and stability in rice V. James, B. Worland, J. Snape and P. Vain 538 Double-right-border (DRB) binary vectors for producing selectable marker-free transgenic rice H. Lu, X. -R. Zhou, L. Wu, J. Gorden, K. Ramm, X. -R. Shen, Z-X. Gong and N. M. Upadhyaya 541 Transforming rice with multiple plasmids Somen Nandi, Liying Wu, Lifang Chen, R. L. Rodriguez and Ning Huang 544 Construction of three transgenic rice populations by maize transposable element Ac/Dc mutagenesis via Agrobacterium tumefaciens Zongxiu Sun, Yaping Fu, Zhengge Zhu, Han Xiao, Jingliu Zhang, Hongxin Zhang, Guocheng Hu, Yonghong Yu, Huamin Si and Menming Hong 547 Transgene structure and expression in a large population of rice plants and their progenies P. Vain, V. James, B. Worland and J. W. Snape 550 Organ-specific gene expression and genetic transformation for improving rice A. K. Tyagi, J. P. Khurana, A. K. Sharma, A. Mohanty, A. Dhingra, S. Raghuvanshi, A. Mukhopadhyay, V. Gupta, S. Anand, H. Kathuria, S. Bhushan, J. Thakur and D. Kumar 552 Rice transformation for resistance to stem borer I. Hanarida Somantri, A. D. Ambarwati, A. Apriana, E. Listanto, I. S. Dewi, T. Santoso, D. Damayanti and I. Altosaar 555 Introducing the CryIA(c) gene into basmati rice and transmitting transgenes to R3 progeny S. S. Gosal, R. Gill, A. S. Sindhu, H. S. Dhaliwal and P. I. Christou 558 Wound-inducible expression of the Bacillus thuringiensis Cry1B gene in transgenic rice J. C. Breitler, V. Marfà, D. Meynard, L. Vila, I. Murillo, M. J. Domínguez Rodríguez, M. Royer, B. San Segundo, J. A. Martínez-Izquierdo, J. Messeguer, J. M. Vassal and E. Guiderdoni 560 Inheritance of cry1A(b) and snowdrop lectin gna genes in transgenic javanica rice progenies and bioassays for resistance to brown planthopper and yellow stem borer I. H. Slamet-Loedin, Novalina, Satoto, D. Damayanti, Sutrisno, E. S. Mulyaningsih, P. Christou and H. Aswidinoor 565 Insect bioassays of transgenic indica rice carrying a synthetic Bt toxin gene, cry1A(c) S. K. Raina, H. K. Khanna, D. Talwar, A. Tiwari and U. Kumar 567 Genotype screening of japonica rice cultivars for Agrobacterium-mediated transformation K. H. Kang, S. H. Choi, H. P. Moon, Y. S. Chung, I. S. Choi, O. Y. Jeong and H. Y. Ryu 570 Transgenic IR72 lines resistant to nine Philippine races of Xanthomonas oryzae pv. oryzae R. R. Aldemita, L. S. Gueco, G. Y. Ilar, E. S. Avellanoza, Z. Shiping and C. Fauquet 573 Characterizing blast-tolerant transgenic rice constitutively expressing the chitinase of the beta-glucanase gene Y. Nishizawa, K. Nakazono, M. Saruta, M. Kamoshita, E. Nakajima, M. Ugaki and T. Hibi 575 Blast-resistant transgenic rice with a phytoalexin gene Z. Tang, W. Tian, L. Ding, S. Cao, S. Dai, S. Ye, C. Chu and L. Li 577 Production of abiotic stress-tolerant transgenic rice plants A. Grover, S. Katiyar-Agarwal, M. Agarwal, C. Sahi, O. Satya Lakshmi, H. Dubey, S. Agarwal and A. Kapoor 579 Genetic engineering of salt and drought tolerance in rice cultivars M. Jacobs, N. Roosens, D. T. Hien, B. Alemany, C. Montesinos, J. M. Mulet, R. Serrano, E. Guiderdoni, J. Van Boxtel, H. H. Zheng, L. T. Binh and T. T. Thu 582 Improved transgene expression systems and dehydration-tolerant transgenic rice plants J. K. Kim 584 Rice histone deacetylase: characterization and expression in transgenic rice plants I. C. Jang, N. J. Kim, B. H. Nahm and J. K. Kim 587 Transgenic rice resistant to imidazolinone herbicides J. Peng, L. Hirayama and C. Lochetto 590 Producing transgenic Basmati rice with the potato protease inhibitor II (PinII) gene by Agrobacterium-mediated transformation R. K. Jain, J. S. Rohilla, S. Bhutani, S. Jain, V. K. Chowdhury, J. B. Chowdhury and R. Wu 593 Genetic analysis and field testing of elite rice cultivars transformed with the antisense waxy gene Qiao-quan Liu, Xiu-hua Chen, Shu-zhu Tang, Zong-yang Wang, Xiu-lin Cai and Ming-hong Gu 596 Transforming indica rice cultivars grown in Vietnam using Agrobacterium tumefaciens or particle bombardment B. B. Bong, T. T. Cuc Hoa, T. K. Hodges and P. Christou 598 Manipulation of ADP-glucose pyrophosphorylase in starch biosynthesis during rice seed development C. Sakulsingharoj, S. -B. Choi and T. W. Okita 601 Modification of starch branching degree in transgenic rice W. S. Kim, K. M. Jun, J. S. Kim, S. I. Song, J. K. Kim and B. H. Nahm 604 Molecular breeding of rice by modulating gibberellin metabolic pathway H. Tanaka, H. Itoh, T. Sakamoto, T. Kayano, Y. Koga-Ban, M. Kobayashi and M. Matsuoka 607 Molecular tools for manipulating rice development: markers for cell proliferation M. K. Mishra, M. R. Fowler, A. C. McCormac, S. Devi, D. J. Blackley, S. M. Daskalova, N. W. Scott, A. Slater and M. C. Elliott 610 Function of Cre/lox site-specific recombination system in the rice genome and its implication Tran Thi Cuc Hoa, E. Huq, J. R. Vincent, H. K. Hodges, B. B. Bong and T. K. Hodges 612 Genetics of rice pathogens Developing and using SCAR (sequence characterized amplified regions) to analyze Magnaporthe grisea populations pathogenic to rice D. Tharreau, O. Soubabère, M. H. Lebrun and J. L. Notteghem 619 Genetics of host range in Magnaporthe grisea A. S. Kotasthane and U. S. Singh 621 Genetic analysis of interaction between rice and the blast pathogen in Thailand P. Sirithunya, T. Toojinda, T. Veerapraditsin, S. Pimpisitthavorn, S. Sriprakhorn, J. Luangsa-ard and E. Roumen 624 Diversity of Pyricularia grisea populations in Thailand S. Sriprakhon, T. Veerapraditsin, S. Pimpisitthavorn, J. Laungsa-ard, E. Roumen and P. Sirithunya 627 Relation between molecular profile and avirulence pattern of Thai isolates of the rice blast pathogen S. Pimpisitthavorn, E. Roumen, K. Poomputsa, S. Sriprakhon, T. Veerapraditsin, J. Luangsa-ard and P. Sirithunya 630 Molecular genetic characterization of the rice blast (Pyricularia grisea) population in Thailand T. Veerapraditsin, T. Toojinda, S. Sriprakhon, S. Pimpisithavorn, E. Roumen and P. Sirithunya 633 Pathogenicity of blast isolates in rice M. J. T. Yanoria, T. Imbe, H. Tsunematsu, L. Ebron, D. Mercado, Y. Fukuta and H. Kato 637 Race differentiation of bacterial leaf blight of rice in DPR, Korea M. G. Ri, C. S. Jong and Y. A. Jo 640 Back

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