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BIOMAT 2009
International Symposium on Mathematical and Computational Biology

Brasilia, Brazil, 1 - 6 August 2009


CONTENTS

FRONT MATTER
i
Modelling Physiological Disorders
MACROPHAGES AND TUMOURS: FRIENDS OR FOE?
H. M. BYRNE and M. R. OWEN
1
TUMOR CELLS PROLIFERATION AND MIGRATION UNDER THE INFLUENCE OF THEIR MICROENVIRONMENT
A. FRIEDMAN and Y. KIM
21
PHENOMENOLOGICAL STUDY OF THE GROWTH RATE OF TRANSFORMED VERO CELLS, CHANGES IN THE GROWTH MODE AND FRACTAL BEHAVIOUR OF COLONY CONTOURS
M. A. C. HUERGO, M. A. PASQUALE, A. E. BOLZÁN, A. J. ARVIA and P. H. GONZÁLEZ
32
EVIDENCE OF DETERMINISTIC EVOLUTION IN THE IMMUNOLOGICAL MEMORY PROCESS
A. DE CASTRO, C. F. FRONZA, R. H. HERAI and D. ALVES
45
Modelling of Biosystems Structure and Biological Physics
MATHEMATICAL AND COMPUTER MODELLING CONTROL MECHANISMS OF HIERARCHICAL MOLECULAR-GENETIC SYSTEMS
H. B. NABIEVICH, S. MAHRUY, H. M. BAHROMOVNA and A. B. RAHIMBERDIEVICH
57
MONTE CARLO SIMULATIONS OF PROTEIN MODELS: AT THE INTERFACE BETWEEN STATISTICAL PHYSICS AND BIOLOGY
T. WÜST, D. P. LANDAU, C. GERVAIS and YING XU
72
STOCHASTIC MATRICES AS A TOOL FOR BIOLOGICAL EVOLUTION MODELS
R. KERNER and R. ALDROVANDI
87
FRACTAL AND NONLINEAR ANALYSIS OF BIOCHEMICAL TIME SERIES
H. PUEBLA, E. HERNANDEZ-MARTINEZ and J. ALVAREZ-RAMIREZ
110
CONTROL AND SYNCHRONIZATION OF HODGKIN-HUXLEY NEURONS
H. PUEBLA, R. AGUILAR-LOPEZ, E. RAMIREZ-CASTELAN, E. HERNANDEZ-MARTINEZ and J. ALVAREZ-RAMIREZ
125
Protein Structure
A CORRELATION BETWEEN ATOM SITES AND AMIDE PLANES IN PROTEIN STRUCTURES
R.P. MONDAINI
136
Ecological Modelling
MATHEMATICAL MODELLING OF SUSTAINABLE DEVELOPMENT: AN APPLICATION TO THE CASE OF THE RAIN-FOREST OF MADAGASCAR
C. BERNARD
152
Population Dynamics
POPULATION DYNAMICS ON COMPLEX FOOD WEBS
L. BEREC
167
NEW ZEALAND PALÆODEMOGRAPHY: PITFALLS & POSSIBILITIES
C. E. M. PEARCE, S. N. COHEN and J. TUKE
194
REGULATION BY OPTIMAL TAXATION OF AN OPEN ACCESS SINGLE-SPECIES FISHERY CONSIDERING ALLEE EFFECT ON RENEWABLE RESOURCE
A. ROJAS-PALMA and E. GONZÁLEZ-OLIVARES
213
EFFECT OF MASS MEDIA ON THE CULTURAL DIVERSITY OF AXELROD MODEL OF SOCIAL INFLUENCE
J. F. FONTANARI
231
LESLIE MATRICES AND SURVIVAL CURVES CONTAIN THERMODYNAMICAL INFORMATION
F. R. MOMO, S. DOYLE and J. E. URE
243
Computational Biology
GRAPH PARTITIONING APPROACHES FOR ANALYZING BIOLOGICAL NETWORKS
NENG FAN, P. M. PARDALOS and A. CHINCHULUUN
250
PROTEIN-PROTEIN INTERACTIONS PREDICTION USING 1-NEAREST NEIGHBORS CLASSIFICATION ALGORITHM AND FEATURE SELECTION
M. R. GUARRACINO, A. NEBBIA, A. CHINCHULUUN and P. M. PARDALOS
263
CLUSTERING DATA IN CHEMOSYSTEMATICS USING A GRAPH-THEORETIC APPROACH: AN APPLICATION OF MINIMUM SPANNING TREE WITH PENALTY CONCEPT
L. S. OLIVEIRA, V. C. SANTOS, L. SILVA, L. MATOS and S. CAVALCANTI
277
NATURAL CLUSTERING USING PYTHON
D. E. RAZERA, C. D. MACIEL, J. C. PEREIRA and S. P. OLIVEIRA
289
Modelling Infectious Diseases
ON THE DYNAMICS OF REINFECTION: THE CASE OF TUBERCULOSIS
C. CASTILLO-CHAVEZ, X. WANG, J. P. APARICIO and Z. FENG
304
THE SPREAD OF THE HIV INFECTION ON IMMUNE SYSTEM: IMPLICATIONS ON CELL POPULATIONS AND R0 EPIDEMIC ESTIMATE
M. ROSSI and L. F. LOPEZ
331
REAL-TIME FORECASTING FOR AN INFLUENZA PANDEMIC IN THE UK FROM PRIOR INFORMATION AND MULTIPLE SURVEILLANCE DATASETS
G. KETSETZIS, B. COOPER, D. DEANGELIS and N. GAY
342
A PROBABILISTIC CELLULAR AUTOMATA TO STUDYING THE SPREADING OF PNEUMONIA IN A POPULATION
Y. SAITO, M. A. A. DA SILVA and D. ALVES
354
CONTRIBUTION OF WATERBORNE TRANSPORT IN THE SPREAD OF INFECTION WITH TOXOPLASMA GONDII
DECCY Y. A. TREJOS and IRENE G. DUARTE
366
SIS EPIDEMIC MODEL WITH PULSE VACCINATION STRATEGY AT VARIABLE TIMES
F. CÓRDOVA-LEPE, R. DEL-VALLE and G. ROBLEDO
377
BACK MATTER
389
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